PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g06850.1
Common NameLR48_Vigan401s004800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 286aa    MW: 31309.2 Da    PI: 9.2863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g06850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-1997147256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Vang07g06850.1  97 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 147
                     59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-1796156No hitNo description
SMARTSM003801.0E-3597160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3197155IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2297154IPR016177DNA-binding domain
PROSITE profilePS5103223.30197154IPR001471AP2/ERF domain
PRINTSPR003673.4E-1098109IPR001471AP2/ERF domain
PfamPF008472.7E-1398147IPR001471AP2/ERF domain
PRINTSPR003673.4E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
LDSIFSDCPP TNAASSNSVL DYLEPFGSSG FEPLGSSVYL RQRDILQKFY QESRGNGNGN  60
GNGNGSLLPT SLANPSINSL YTASLTSSLT NPSKKKLYRG VRQRHWGKWV AEIRLPQNRM  120
RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPT KLGFGDSARL NALKSSVDAK  180
IQAICQKVKR ERAKKIAAKK LSSATAHATR KESEKINSSA SSSSSSLPLS PPSIFCDNWA  240
NELFSPSVVS TECQMMVTDE TEFEGCSLAR LPSFDPELIW EVLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2093154163ATERF1
3gcc_A4e-2093154163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519928.11e-166PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-63ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0L9T9851e-169A0A0L9T985_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6031e-169A0A0S3T603_PHAAN; Uncharacterized protein
STRINGGLYMA01G43450.11e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-46ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]